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Bas Bargmann

@bas-bargmann.bsky.social

232 Following196 Followers

Associate Professor Virginia Tech School of Plant and Environmental Sciences

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@gabkrouk.bsky.socialOct 2, 2026, 3:22 PMReposted by @bas-bargmann.bsky.social

#GeneCloud is back 🌱

Our 2015 tool (Mol Plant) that finds the words over-represented in the descriptions of a gene list, rebuilt with
@claudeai
: 2026 TAIR annotation, exact hypergeometric test + FDR, runs in your browser.

👉 gabkrouk.github.io/genecloud/

#PlantScience

@corncolors.bsky.socialOct 1, 2026, 5:50 PMReposted by @bas-bargmann.bsky.social

The UGA Genetics Department is hiring! Please help spread the word. We have an opening for an Associate Professor/Professor in Genetics, Synthetic Biology, and Biological Engineering. See ad for details – and join us here in Athens, GA!

@dev-journal.bsky.socialOct 1, 2026, 5:04 PMReposted by @bas-bargmann.bsky.social

Issue 18 is now complete!

Cover: Confocal image of an eight-day-old microcolony cultured from a single #Arabidopsis leaf protoplast, with visualisation of the cell membrane (green) and the nuclei (magenta). See Research Article by Reed, @bas-bargmann.bsky.social et al.

doi.org/10.1242/dev....

Cover: Confocal image of an eight-day-old microcolony cultured from a single Arabidopsis leaf protoplast, with visualization of the cell membrane (green) and the nuclei (magenta). See Research Article by Reed et al. (dev205715).
@peiferlabunc.bsky.socialSep 28, 2026, 11:14 AMReposted by @bas-bargmann.bsky.social

Are you looking for a postdoc exploring the cell biology of development, defining how cells change shape and move? Do you want to develop a research program & teaching skills preparing you for a position at a college or small University? Our new NIH grant will support those goals 1/n Please share

@marketapernis.bsky.socialSep 28, 2026, 12:11 PMReposted by @bas-bargmann.bsky.social

We have an open PhD position in plant in vitro regeneration! 🌱👇
www.muni.cz/en/about-us/...

@bas-bargmann.bsky.socialSep 25, 2026, 2:29 PM

In conclusion, we are very happy to share this technique with the community and would be delighted to see others use this system for their research! I am thankful to all who contributed to this work, including the editors and reviewers at @dev-journal.bsky.social (11/n)

@bas-bargmann.bsky.socialSep 25, 2026, 2:29 PM

Lastly, we were also able to visualize the development of transcriptional asymmetry in a growing microcolony. Using a dual auxin- and cytokinin-signaling reporter-gene construct, it was seen that the reporter expression starts to diverge into distinct domains in more mature microcolonies. (10/n)

@bas-bargmann.bsky.socialSep 25, 2026, 2:28 PM

We managed to capture the donut-shaped structure of microtubules surrounding a phragmoplast forming between two recently separated nuclei. Thanks to Emry Ng for the image processing! (9/n)

@bas-bargmann.bsky.socialSep 25, 2026, 2:28 PM

We also used a Lattice Lightsheet microscope to perform high-temporal resolution live imaging of cultured cells. This set up allowed us to catch a dividing cell in the act. Our favorite is an example showing the microtubule dynamics during the first division of a regenerating protoplast. (8/n)

@bas-bargmann.bsky.socialSep 25, 2026, 2:27 PM

We also showcased the use of additional cellular markers, for the Golgi and microtubules. Confocal Z-stacks of developing microcolonies demonstrate the intricate details of intracellular organization of cellular compartments and components during the early stages of regenerative development. (7/n)

@bas-bargmann.bsky.socialSep 25, 2026, 2:26 PM

Furthermore, the inclusion of fiducial fluorescent beads embedded within the alginate discs allowed us to find and track the same cells over time. (6/n)

@bas-bargmann.bsky.socialSep 25, 2026, 2:26 PM

To visualize the development of protoplast regeneration microscopically with enhanced detail and resolution, we incorporate fluorescent cellular markers for the plasma membrane and the nucleus. To better distinguish cell-division events, which can be challenging with brightfield microscopy. (5/n)

@bas-bargmann.bsky.socialSep 25, 2026, 2:25 PM

Part of the novelty of this method is the embedding of protoplasts in alginate discs that fit into the wells of a 24-well plate. This format “enables high throughput experimental design: a single isolation yields more than 24 discs, each potentially representing an independent treatment.” (4/n)

@bas-bargmann.bsky.socialSep 25, 2026, 2:25 PM

This work was initiated over seven years ago, when Kelsey first started to develop a protoplast regeneration system using Arabidopsis. There were several methods already published, but we struggled to make them work in our hands. We hope that the method used here will be more transferrable. (3/n)

@bas-bargmann.bsky.socialSep 25, 2026, 2:24 PM

It is titled “A protoplast-based method to visualize early cell biological events in plant cellular reprogramming and regeneration” and that basically says it all. Nonetheless, I will take this opportunity to walk you through the main points. We also made the cover! #FluorescenceFriday (2/n)

@bas-bargmann.bsky.socialSep 25, 2026, 2:23 PM

I am very pleased to present the lab’s first #bluetorial!
This concerns our recent publication in Development @dev-journal.bsky.social doi.org/10.1242/dev.... This work, led by postdoc (and former grad student) Kelsey Reed, is the result of many years of hard work by a wonderful team. (1/n)

@fluvialbenthos.bsky.socialSep 24, 2026, 9:53 PMReposted by @bas-bargmann.bsky.social

We (Biological Sciences at Virginia Tech) are #hiring TWO tenure-track Molecular Microbiology professors! Review of applications starts 1 Nov. I'm happy to answer questions about the department, VT, life in Blacksburg, etc.! More info / to apply: jobs.apply.vt.edu/jobs/assista... 🧪👩‍🔬🦠 #academicjobs

@kierzkowskilab.bsky.socialSep 12, 2026, 10:27 PMReposted by @bas-bargmann.bsky.social

🌱We are looking for an Assistant Professor in Plant Molecular Genetics @irbv.bsky.social If you are passionate about genetics, molecular biology, or imaging, this is your chance to join a community of researchers working on plant development, cell biology, evolution, ecology, and biodiversity. 👇

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