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@prepub-singlecell.bsky.socialSep 17, 2026, 10:02 AM

Multi-Channel CFD Uncovers Pressure Drop–Reactant Distribution Trade- Offs and NPMC Viability in High-Temperature PEM Fuel Cells #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10856575/latest

@gpbees.bsky.socialSep 17, 2026, 9:14 AM

By integrating single-cell resolution with spatial context, SPCC provides a computational route to uncover spatially organized cellular interactions that may otherwise remain hidden.
💻 Code: github.com/ploughhh/SPCC

#SingleCell #SpatialBiology #Bioinformatics #DeepLearning 6/6

@prepub-singlecell.bsky.socialSep 17, 2026, 7:01 AM

Early-life conditions shape baseline immune gene expression, but not pathogen-induced immune activation, in brown trout #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.11.750927v1

@prepub-singlecell.bsky.socialSep 17, 2026, 7:00 AM

Environmental stress promotes entry into a pre-existing latent state in Plasmodium falciparum #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.13.751295v1

@prepub-singlecell.bsky.socialSep 17, 2026, 7:00 AM

Single-molecule imaging of DNA repair and cytoplasmic rigidification in intracellular bacteria #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.14.751380v1

@prepub-singlecell.bsky.socialSep 17, 2026, 7:00 AM

Empirical Estimation of Ambient Contamination in Combinatorial Single-Cell Methods Using Multi-Reference Mapping #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.11.750809v1

@prepub-singlecell.bsky.socialSep 17, 2026, 7:00 AM

Uncertainty-Aware Model Selection with a Calibrated Probability-Generating-Function-Based Bayesian Information Criterion #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.11.750968v1

@prepub-singlecell.bsky.socialSep 17, 2026, 7:00 AM

Estimand-aware and donor-aware triangulation of predefined gene-set signals across human tendon transcriptomic datasets #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.11.750964v1

@prepub-singlecell.bsky.socialSep 17, 2026, 4:00 AM

FlowLOT: Linearized Optimal Transport for Flow Cytometry Analysis #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.17906

@prepub-singlecell.bsky.socialSep 17, 2026, 4:00 AM

Title: The Cyanobacterial dnaX Intein Encodes an Out-of-Frame Homing Endonuclease and is Sporadically Distributed in the Phylum #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.14.751524v1

@prepub-singlecell.bsky.socialSep 17, 2026, 1:01 AM

Signatures of the neutralizing dengue virus-reactive memory B cell repertoire identified by multiplexed envelope dimer probes #SingleCell 🧪🧬🖥️
https://www.medrxiv.org/content/10.64898/2026.09.15.26363039v1

@prepub-singlecell.bsky.socialSep 17, 2026, 1:01 AM

Simulated Annealing Identifies Five Shared Drivers of T Cell Exhaustion Across Four Human Cancers #SingleCell 🧪🧬🖥️
https://www.medrxiv.org/content/10.64898/2026.09.15.26363102v1

@prepub-singlecell.bsky.socialSep 17, 2026, 1:01 AM

Polyamine Metabolism Drives Immune Evasion in Malignant Epithelial Cells and Defines a Six-Gene Prognostic Signature for Colorectal Cancer #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10843169/latest

@prepub-singlecell.bsky.socialSep 16, 2026, 10:00 PM

scACORN: Context-engineered agent orchestration of specialized small language models for single-cell transcriptomic interpretation #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.10.750801v1

@prepub-singlecell.bsky.socialSep 16, 2026, 10:00 PM

Scalable expansion of human iNKT cells: single-cell profiling and in vivo control of GvHD with preserved GvL activity #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.11.750594v1

@prepub-singlecell.bsky.socialSep 16, 2026, 7:00 PM

Flow Orchestrated Regulatory Genomics Engine (FORGE): A Configurable Nextflow Pipeline for End-to-End snMultiome Analysis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.10.750690v1

@prepub-singlecell.bsky.socialSep 16, 2026, 7:00 PM

Extraocular Electrical Stimulation Activates Retinal Ganglion Cells In Vivo #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.10.750688v1

@prepub-singlecell.bsky.socialSep 16, 2026, 7:00 PM

Targeting Tumor Immunity: Statins as a Repurposed Strategy for Preventing Ovarian Cancer Advancement #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.14.751179v1

@epigenometech.bsky.socialSep 16, 2026, 4:04 PM

New from Epigenome Technologies: Paired-Tag - the first single-cell multiomic assay that simultaneously captures RNA expression and epigenetic marks

#Epigenetics #SingleCell #PairedTag #Multiomics

Find out more at: u.epigenome.us/pCTHvQHK

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@prepub-singlecell.bsky.socialSep 16, 2026, 4:01 PM

Integrative Mendelian Randomization and Single-Cell Transcriptomic Analyses Reveal Ferroptosis-Related Protective Genes and Tumor Microenvironmental Remodeling in Colorectal Cancer #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10314337/latest

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