@luispedrocoelho.bsky.social
Content creator for Elsevier, NPG, and others Microbiome researcher Based in Brisbane
@svetlanaup.bsky.socialReposted by @luispedrocoelho.bsky.socialJuan Inda (@bigdatabiology.bsky.social) will discuss how the choice of ARG annotation tool influences resistome profiles derived from metagenomic data. (More context in the thread below)
See you at #MVIF 52! cassyni.com/s/mvif-52
@physaliacourses.bsky.socialReposted by @luispedrocoelho.bsky.socialAfter the first part of our #EnvironmentalMetagenomics course, focused on short-read analysis with @oskolkov.bsky.social , we’re now moving on to long-read metagenomics with @luispedrocoelho.bsky.social exploring data from @nanoporetech.com and @pacbio.bsky.social 🧬
@physaliacourses.bsky.socialReposted by @luispedrocoelho.bsky.social🚨 Last call for Environmental Metagenomics with @luispedrocoelho.bsky.social & @oskolkov.bsky.social !
Only 1 seat left for this course! 🧬
Interested in exploring the microbial world and learning practical approaches to environmental metagenomics? This is your last chance to join us!
@luispedrocoelho.bsky.socialI'm going to be in Berkeley for the Progress Conference from Tuesday! Please say Hi if you want to get a coffee and chat science, progress, vibe sciencing or any other topic might be of mutual interest...
@luispedrocoelho.bsky.socialWe might soon get to 1 mg-worth of publicly available DNA!
@luispedrocoelho.bsky.socialPeople say that the ENA/SRA are huge databases, but it's only 100 µg of DNA!
@luispedrocoelho.bsky.socialbigdatabiology.substack.com/p/bdb-lab-se...
Our latest newsletter! Everyone presents
@bigdatabiology.bsky.socialReposted by @luispedrocoelho.bsky.socialSemiBin 2.5.0 is out 🎉
concatenate_fasta() can now preserve full FASTA headers (e.g. circularity flags) when merging samples
/ht Jim Downie (github.com/prototaxites) for the suggestion
Agents make releases easy now: expect more frequent ones in the future
@bigdatabiology.bsky.socialReposted by @luispedrocoelho.bsky.socialJug 2.6.0 is out
Robustness and QoL fixes
Heads-up: Py 3.14+ and lambda Tasklets will recompute once., but this does ensure backwards compatibility with Python 3.13 and earlier
@luispedrocoelho.bsky.socialNew substack: on porting NGLess from Haskell to Rust (with claude, obviously)
