@nfdi4bioimage.bsky.social
NFDI4BIOIMAGE, a consortium of the NFDI in Germany, is a legally non-independent collaboration project. It focuses on research data management for bioimaging and image analysis. The consortium does not act autonomously towards third parties.
@nfdi4bioimage.bsky.socialWhat could be better than complete and comprehensive metadata for a large dataset? As the person in the cartoon below has already realized, well-maintained metadata can be considered an art form.
"The Beauty of Metadata" by Henning Falk is licensed under CC BY 4.0.
👉 doi.org/10.5281/zeno...
@nfdi4bioimage.bsky.socialIn addition to numerous exciting presentations and talks, a large number of NFDI4Bioimage representatives presented their own solutions and approaches, and exchanged ideas and concerns with the community. Susanne Kunis, Jens Wendt, and @tom-bssnnt.bsky.social also chaired entire sessions.
@nfdi4bioimage.bsky.socialMeeting the community at #RDM4Mic
Last week, @nfdi4bioimage.bsky.social took part in and helped to host RDM4Mic, a community meeting about research data management for microscopy, which took place at @cecad.bsky.social and the Max Planck Institute for Biology of Ageing.
@nfdi4bioimage.bsky.socialMeet our data steward Riccardo Massei and task area lead @haesleinhuepf.bsky.social at the Image Deep Dive Day in Leipzig on November 10 and learn more from them about OMERO.figure and generative AI.
Registration is still open: 👉 events.hifis.net/event/3982/
@nfdi4bioimage.bsky.social👉 Find out more about the dataset: nfdi4bioimage.de/en/community...
@nfdi4bioimage.bsky.socialThanks to OME-Zarr, you can browse and analyse it straight from the cloud or on #HPC without downloading the dataset. And because the data are openly available, others can revisit them to validate results, train new models, or spot biology the original study didn't look for.
@nfdi4bioimage.bsky.socialCurious to see what a malaria parasite looks like during different stages of cytokinesis? 🫣
In this month’s @nfdi4bioimage.bsky.social calendar, we present a dataset of Plasmodium falciparum in EMPIAR and available as OME-Zarr via the @bioimagearchive.bsky.social, both hosted by @ebi.embl.org.
@nfdi4bioimage.bsky.social🌌 “Galaxy” as a web-accessible, reproducible, and transparent platform for image analysis
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☁️ Cloud-based image analysis with BAND and Napari
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📍 Enabling FAIR Geospatial metadata in OMERO with Semantic Web Technology
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@nfdi4bioimage.bsky.socialFor anyone who was unable to attend this year’s Boosting Biodata Bootcamp, we’ve compiled the presentations by @nfdi4bioimage.bsky.social speakers:
🔬 Research Data Management for Microscopy – OMERO
👉 doi.org/10.5281/zeno...
💻 Love ImageJ? Advantages of using JIPipe
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@nfdi4bioimage.bsky.social🕐 The RDM4mic Meeting is just around the corner, and we would like to remind you of the online introductory session hosted by Thomas Zobel today, 1 October, at 1:00 pm.
You can find the Zoom link for the introductory session on the event website:
👉 hackmd.io/Z0IahqkXSIun...
@nfdi4bioimage.bsky.socialAt this week's DSgG Community Meeting, themed “DSgG – from going to growing,” our data stewards Vanessa Fuchs, Cornelia Wetzker, and Jens Wendt presented a poster introducing @nfdi4bioimage.bsky.social and its data steward concept.
Find the poster on zenodo: 👉 doi.org/10.5281/zeno...
@nfdi4bioimage.bsky.socialThis paper presents a training curriculum for data stewards specializing in biological imaging and provides a structured overview of the interdisciplinary knowledge, competencies, and training resources required throughout the life cycle of biological imaging data.
@nfdi4bioimage.bsky.socialNew publication: "Curriculum for Bioimaging Data Stewardship: A Systematic Review of Existing Training Resources." Congrats to Maximilian Müller et al! 💐
👉 doi.org/10.12688/f10...
Feedback from the community would be extremely valuable, and volunteers for the open peer review are very welcome!
@nfdi.deReposted by @nfdi4bioimage.bsky.social🧩
Would you like to expand your data skills? The Historical Insight and Skills Training Online Catalogue (HISTOCAT) by #NFDI4Memory offers a curated collection of open educational resources all about data literacy in history-related disciplinen, feel free to contact us!
🔗
4memory.de/unterstuetzu...
@nfdi4bioimage.bsky.socialBetween consortium and campus – this is exactly where most of our data stewards work. If you’ve ever wondered whether this role might be right for you, then these insights by our @nfdi4bioimage.bsky.social data steward Dr. Cornelia Wetzker might be of interest for you.
@nfdi4bioimage.bsky.socialThe #BoostingBioDataBootcamp has just concluded. We want to thank all speakers, workshop providers, and, of course, all participants for lively and fruitful discussions and exchanges. @nfdi4microbiota.bsky.social, #NFDI4Biodiversity, @nfdi4plants.bsky.social, @fairagro.bsky.social. 👏
@schmchris.bsky.socialReposted by @nfdi4bioimage.bsky.social#BoostingBiodataBootcamp by @nfdi4microbiota.bsky.social, @fairagro.bsky.social, @nfdi4plants.bsky.social, #NFDI4Biodiversity & @nfdi4bioimage.bsky.social in full swing. Impressions from day 1 incl. the opening by Konrad Förstner, a keynote by Tom Clavel & the workshop afternoon. Day 2 kickin' off!
@schmchris.bsky.socialReposted by @nfdi4bioimage.bsky.socialOn my way to Aachen. Looking forward to the Boosting Biodata Bootcamp by #NFDI consortia @fairagro.bsky.social @nfdi4microbiota.bsky.social @nfdi4plants.bsky.social #NFDI4Biodiversity and @nfdi4bioimage.bsky.social! Looking forward to three exciting days with talks and workshops around Biodata RDM!
@nfdi4bioimage.bsky.social👉 You can find all the information about #TdF2026 here: www.fdm.nrw/tdf-2026.
👉 You can register for the morning program directly here: uni-due.zoom.us/meeting/regi...
@nfdi4bioimage.bsky.socialJoin us on November 10 for a journey with your research data at #TdF2026 in NRW. A successful data journey requires good planning, right equipment, and a clear goal. @sweidtkamp.bsky.social from @nfdi4bioimage.bsky.social and other speakers will be there to help you prepare for your data journey.
