Josh Moore (@joshmoore.bsky.social)

@nfdi4bioimage.bsky.social Oct 6, 2026, 11:37 AMReposted by @joshmoore.bsky.social

Curious to see what a malaria parasite looks like during different stages of cytokinesis? 🫣

In this month’s @nfdi4bioimage.bsky.social calendar, we present a dataset of Plasmodium falciparum in EMPIAR and available as OME-Zarr via the @bioimagearchive.bsky.social, both hosted by @ebi.embl.org.

This composite from EMPIAR-10392 features FIB-SEM images of the malaria parasite Plasmodium falciparum 3D ultrastructure during different cytokinesis stages: (i) mid-segmentation, (iii) Parasitophorous Vacuole Membrane rupture, (ii+iv) post-PVM rupture.

@image.coop Oct 2, 2026, 4:55 AMReposted by @joshmoore.bsky.social

Last call for abstracts (deadline Tue Oct 6) for the 29th Australian Conference on Microscopy & Microanalysis!

www.acmm29.org

Feb 1-4, 2027 in Sydney, Australia! 🐨 #ACMM29

The ACMM29 banner image: a composite of the Sydney Opera House at night time, with glowing microscopy images overlaid on each sail.

@ekatrukha.bsky.social Sep 11, 2026, 2:53 PMReposted by @joshmoore.bsky.social

I'm always very happy to see the #Fiji gang & co, this time during the OME-Zarr Java hackathon in Dresden (imglib2/BDV motherland?).
My personal progress: increasing max # of volumes in #BigVolumeViewer from 15 to ~200. Still not high enough, but there was not enough time.

@bogovicj.bsky.social Sep 24, 2026, 1:07 AMReposted by @joshmoore.bsky.social

Here's a whimsical example of what you can achieve with #bigwarp and the brand new #ome-zarr 0.6!

@mpanknin.bsky.social Sep 24, 2026, 1:05 PMReposted by @joshmoore.bsky.social

Multichannel rendering in Kiln v0.4.1 beta.

This is a fruit fly brain. Unlike the ones currently all over your feed, it doesn't play Beat Saber.

It just sits there, streamed from OME-Zarr in native WebGPU and rendered at full 16-bit precision across four fluorescence channels.

#OME-Zarr #WebGPU

@bogovicj.bsky.social Oct 1, 2026, 2:45 AMReposted by @joshmoore.bsky.social

It's @perlman.bsky.social representing the @image.coop at #i2kbina2026!

@sebi06.bsky.social Sep 30, 2026, 2:25 PMReposted by @joshmoore.bsky.social

Hi all,

prototype of a napari-zenapi-streaming plugin is working using @zeiss-microscopy.bsky.social and @napari.org.

- stream pixels from ZEN into multi-dim array and display live
- stream pixels from ZEN directly into OME-ZARR (see video)

For viewing I used: find-nuclei.github.io

@joshmoore.bsky.social Sep 25, 2026, 8:48 AM

ICYMI: OME-Zarr 0.6 is out! 🎉 This is big, years in the making. @bogovicj.bsky.social & @jo-soltwedel.bsky.social perseverance brought transformations into this next major step on the road to OME-Zarr 1.0. 👏👏👏 Huge congratulations to the Johns — and to everyone who helped get us here! 🥳🙌

@merlinlange.bsky.social Sep 15, 2026, 9:00 PMReposted by @joshmoore.bsky.social

🔬🧪 We're hiring postdocs&engineers at Institut de la Vision in AMAZING Paris 🇫🇷!!

Join a dynamic team working at the nexus of retina developmental biology, spatial omics & advanced imaging

Ambitious science in a supportive & young inclusive team 🚀

DM me for more info & please share 🙏 #academicsky

@image.coop Aug 27, 2026, 12:39 PMReposted by @joshmoore.bsky.social

The next OME-Zarr Office Hours is coming up in just over 2h! 8am SFO / 11am NYC / 5pm Paris. Come ask any questions about OME-Zarr, and/or watch @kevinyamauchi.bsky.social live-convert an HCS (High Content Screening) dataset to RFC-8 syntax!

ngff.openmicroscopy.org/community/#o...