@napari.org
n-dimensional image viewer for Python
@napari.orgATTN: The first round of applications for the napari developers-in-residence closes October 13th 11:59pm AoE. ⏰ We appreciate the great response, so finish up those applications! There may be a second round which we'd also announce on socials.
📖 Read more & apply: napari.org/island-dispa...
@jo-soltwedel.bsky.socialReposted by @napari.orgJust released the napari-clusters-plotter 0.11.0 github.com/BiAPoL/napar..., a little passion-project of mine for interactive exploration of datasets and attached features in @napari.org Two cool things to take note of 👇
@napari.orgNew blog post: a recap of our latest hackathon, naPLari in Krakow, Poland, this past July! Read why our hackathons are world famous! (With GloBIAS, we've had attendees from every continent except Antarctica!) And give us a follow to make sure you don't miss the next one!
@makaefer.bsky.socialReposted by @napari.orgWant to enhance your image analysis skills with napari?
We’re running a two-day training event on how to use napari to effectively analyse your bioimaging data.
🕒 Applications close on 15 September.
Learn more and apply 👇
@napari.org🚀 napari is hiring Remote Developers-in-Residence!
Join us to build the future of interactive n-dimensional data visualization in Python.
💻 60% Dev / 20% Maintenance / 20% Community & Outreach ⏱️ Contract, 14–35 hrs/wk 🌍 Global 100% Remote
Learn more and apply today: napari.org/island-dispa...
@clairedessalles.bsky.socialReposted by @napari.orgNeMo is finally out! 🐟
We present our new method to peel cellular layers and extract their nematics.
If you're wondering what a fish has to do with curved nematics, check out the thread and the publication 👀👇🏼
@jo-soltwedel.bsky.socialReposted by @napari.org🟦🟦🟦 Less fancy, just as handy: Attaching simple translations to your image tiles allows the #stitching tool of your choice (here: github.com/multiview-st... at work in @napari.org) and just hit "Fuse".
Dataset from github.com/JaneliaSciCo...
@jo-soltwedel.bsky.socialReposted by @napari.orgOME-Zarr 0.6 allows to compose multi-modal image data across dimensionalities into a joint dataset and ingest it into a supporting viewer of your choice. Combining image data across scales from µm 🧫 to cm 🧠 and beyond will be much easier now!
Dataset source: rodare.hzdr.de/record/3131
@jo-soltwedel.bsky.socialReposted by @napari.orgThe main new things in 0.6 are ✨transformations ✨ - adding the "Where" directly to your image data. Some data (e.g., SCAPE microscopy) require a transform to display correctly. View your data correctly, data-duplication free with OME-Zarr 0.6! (UI is WIP, made for @napari.org x napari-ome-zarr)
@henriqueslab.bsky.socialReposted by @napari.org🔬🚀 Out now in Communications AI & Computing: mAIcrobe, our open-source napari plugin for high-throughput bacterial image analysis. Segmentation, morphological profiling and cell cycle classification, all in one place 👇
@neuroinformatics.devReposted by @napari.orgOur Google Summer of Code participants have been writing up their projects.
First up, Anna Teruel-Sanchis who built an interactive GUI in @napari.org for correcting pose estimation tracks directly within the movement framework.
Read more in Anna's blog: neuroinformatics.dev/blog/gsoc_20...
@napari.orgThanks for the shout out! 😍 Our goal in writing this blog was to share the (recent) overthinking we've done our typechecking journey to help others. Thank you Aniket for writing this up! Our new triage team truly shined 🌠 on this multi-week process: napari.org/stable/devel...
@drlachie.bsky.socialReposted by @napari.orgProud to present the publication of napari-lattice – our solution to the immense computational requirements of Lattice Light Sheet and Oblique Plane Microscopy.
onlinelibrary.wiley.com/doi/10.1111/...
Before I get into the thread, the important part is on github:
github.com/BioimageAnal...
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@tamasnagy.comReposted by @napari.orgEven with all the advancements in automated cell tracking getting us to 90%+ accuracy...that's still a lot of broken tracks over long movies!
Our brains are pretty good at this so I made Vizsla 🐕, a little @napari.org plugin, to help you fix your tracks manually.
@napari.orgnapari needs your help! Has napari helped you make cool and groundbreaking discoveries? We'd love to highlight that in our docs. Please tell us about it! You can fill in this survey:
napari.typeform.com/to/vTCKeTKv
and/or, as ever, drop by our chat room or meetings:
🙏
