Grilled Cheese

ExploreLog inSign up

Chive

@chive.pub

63 Following223 Followers

Decentralized eprints with ATProto. https://chive.pub/

PostsRepliesMedia
@cosmik.networkOct 5, 2026, 8:25 PMReposted by @chive.pub

September updates! The leaves are changing colors, the last of the holidays is over and we’re back in full swing! 🍁

@chive.pubSep 9, 2026, 1:37 AM

Re: bioRxiv, do you just mean an indexed import source? If so, there are some challenges with the way the bioRxiv API is set up, but we can look into workarounds if there’s interest. A simple “enter the DOI to get started” should be straightforward, it’s automated import suggestions that are harder.

@chive.pubSep 9, 2026, 1:24 AM

That post is talking specifically about layers.pub datasets, which are collections of ATProto records. Papers can point to DOIs (inside the publishedVersion field). We don’t mint DOIs however, so they need to come from some other source.

@chive.pubSep 8, 2026, 3:39 PM

Finally, papers on chive.pub now show which other papers cite them, as a graph you can move around in. We extract references from each PDF with grobid (github.com/grobidOrg/grobid) and match them against what's indexed.

An example of the chive citation graph visualizer.An example of a citation tab.
@chive.pubSep 8, 2026, 3:39 PM

Submitting an eprint can also optionally record it on your @sifa.id profile in the same step, so you don't have to enter a paper twice.

@chive.pubSep 8, 2026, 3:39 PM

Chive now reads your @sifa.id profile if you have one and populates your public profile with current and previous affiliations automatically.

An example of a profile populated by metadata from sifa.id.
@chive.pubSep 8, 2026, 3:39 PM

Relatedly, check out @layers.pub's recent announcement about the repo.layers.pub data PDS and lairs (layers.pub/lairs) toolkit.

@chive.pubSep 8, 2026, 3:39 PM

You can also point a paper at a @layers.pub dataset it introduces or uses. A dataset is named by at-uri rather than by a URL at some host, so the reference is to the record and doesn't depend on a particular page staying up.

A data tab for a paper showing a layers record and python code for downloading the data.
@chive.pubSep 8, 2026, 3:39 PM

@tangled.org repositories can now be referenced by at-uri rather than by URL.

@chive.pubSep 8, 2026, 3:39 PM

You can now post an event with @smokesignal.events or anything else using community.lexicon.calendar.event, list the eprint among its URIs, and the paper shows where it was presented.

@chive.pubSep 8, 2026, 3:39 PM

New eprints publish a site.standard.document record, so @standard.site readers can pick them up. Sharing an eprint to bluesky also records the post on that document, which makes the reply thread findable from the paper.

@chive.pubSep 8, 2026, 3:39 PM

Records from Semble (@cosmik.network) and @margin.at reach chive as well. Adding a paper to a Semble collection, connecting two works, or annotating one on Margin now shows on the paper.

@chive.pubSep 8, 2026, 3:39 PM

@leaflet.pub documents and comments that reference an eprint now show up on it. Chive picks up the reference whether it's an inline link in the prose, a website block, or the subject of a comment.

@chive.pubSep 8, 2026, 3:39 PM

Papers on chive.pub now have an Atmosphere tab, which collects up records elsewhere on the network that refer to it.

An image of a populated Atmosphere tab on a paper.
@chive.pubSep 8, 2026, 3:39 PM

Alongside a bunch of bug fixes, we've got a few new features on chive.pub we're excited about. Most of them involve connecting a paper to other things that relate to it on the Atmosphere and beyond.

@atproto.scienceAug 28, 2026, 4:28 PMReposted by @chive.pub

We made a thing!
Check out our new #ATScience ecosystem map ✨
All projects, organized in one place: atproto.science/ecosystem/

Ecosystem Map
atproto.science/ecosystem/
ATSCIENCE
pplications, infrastructure and communities on AT Protocol
ANNOTATION KNOWLEDGE TOOLS
Margin.at
Semble
Skysquare
BlueNotes
Layers
Viewsift
SciOS Graph Infrastructure
PUBLISHING
Chive
Standard.site
Groundmist.xyz
Matadisco
Meitheal
Podium
atdata
nebra
Habitat
SOCIAL APPS FOR RESEARCHERS.
tea
EVALUATION
Paperstars
DEVELOPMENT
CITIZEN SCIENCE
IN DEVELOPMENT
GainForest
observ.ing
Tiles
co/core AI cooperative
BioKEA
hypgen
FEEDS
Social
Paper Skygest
DEVELOPMENT
DEVELOPMENT
HOSTING
NETWORKING
Sifa
FUNDING
Catalyze
Hypercerts
VERSION CONTROL
tangled
COMMUNITIES
Astrosky
Medsky
IN DEVELOPMENT
3
Terms of UsePrivacy PolicyCommunity StandardsHelpGet the app

Grilled Cheese is a product of Village Compute

Version devBuilt at: 2026-10-11 19:07:23 EDT