#TEsky Reconstruction of contact signals from repeated elements with Hicberg doi.org/10.1101/gr.2...

#TEsky Fun Friday thing: we were in a meeting talking about a PCA with different human retrotransposon subfamilies on it, and someone described one as a 'weird Alu', which prompted at least three of us to say 'Weird Alu Yankovic', so that's fun

#TEsky R2Tg retrotransposon mediated targeted integration of exogenous genes into the 28S rDNA locus in mammalian cell lines for PKU gene therapy www.frontiersin.org/journals/gen...

#TEsky Active and unusually expanded PIF/Harbinger transposable elements in the Caenorhabditis inopinata genome academic.oup.com/gbe/advance-...

#TEsky Transposable Element Dynamics Drive the Genomic Evolution and Phenotypic Diversification of Allotetraploid Common Carp advanced.onlinelibrary.wiley.com/doi/10.1002/...

#TEsky The analysis of minor taxa highlights the role of the environment and phylogeny in the distribution of the LTR-retrotransposon Copia clades doi.org/10.1038/s414...

#TEsky Transposon-mediated structural haplotypes at CsMYB60 are associated with peel coloration in cucumber link.springer.com/article/10.1...

#TEsky Transposable elements as evolutionary catalysts of ant macrodiversity doi.org/10.1126/scia...

#TEsky Extensive tandem repeat repertoires in ranid frogs and the role of transposable elements in their evolution doi.org/10.1186/s129...

#TEsky Coexistence of piRNA and KZFP defense systems: evolutionary dynamics of layered defense against transposable elements doi.org/10.1093/gene...

Very happy & proud to share that this paper, led by graduate student Ayanna Mays (first grad student led paper of the lab) is now published 🎉 🧪 #TEsky

link.springer.com/article/10.1...

www.annualreviews.org/content/jour...
#TESky

I wrote peer review comments for a recent bioRxiv preprint from the SMaHT consortium @smahtnetwrk.bsky.social here:

hyp.is/YZCCeKp1EfGb...

Consortium is a $140M USD NIH Common Fund initiative to deeply sequence human tissues. I hope the comments, mainly on the mobile DNA part, are useful. #TEsky

📢 We (@clementgoubert.bsky.social @ritarebollo.bsky.social) are happy to share our new mini-review: “Computational Tools and Lessons Learned from Annotating Transposable Elements in Insect Genomes” doi.org/10.1016/j.co...

#TransposableElements #TEannotation #InsectGenomics #Bioinformatics #TEsky 🧵👇