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@biohackrxiv.fediscience.org.ap.brid.gy Sep 18, 2026, 5:23 PM

"Building InterMine databases from RDF Portal" https://doi.org/10.37044/osf.io/dqm3j_v1

#biohackathon #rdf #intermine #BH26JP

"The public HumanMine has not had a data release since February 2022. RDF Portal, operated by the Database Division for Life […]

[Original post on fediscience.org]

Figure 1:How a mine gets its data. (a) Today each HumanMine source has its own loader, written and maintained as code by the mine’s developers. (b) With RDF Portal and rdfc2im, the work for each dataset moves upstream: RDF Portal holds each dataset’s RDF and an rdf-config model written in rdf-config’s common form, made once and reused by every consumer. rdfc2im is one tool for all sources, and what remains for each source is a curated mapping, kept as data with the evidence for every row. Tags show scope (per source, per dataset, shared, reused), effort (manual, automatic) and form (code, template, data).

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