Benjamin Hershey from the lab of @andreasmoor.bsky.social @bsse.ethz.ch presents an organoid model of liver metastasis from colorectal cancer.
#BaselSpatialOmicsSymposium

Jonas Zierer from @novartis.bsky.social, studying Sjögren's disease with Xenium. This autoimmune disease is characterized by expansion of B cells in salivary glands.
#BaselSpatialOmicsSymposium

Mariana Ribeiro from @iobswiss.bsky.social presents the FLIGHT-seq method = spatial transcriptomics + long reads 🤯🚀
#BaselSpatialOmicsSymposium

@lguerard.bsky.social from the @biozentrum.unibas.ch presents the Sopa pipeline for analyses of image-based spatial omics: www.nature.com/articles/s41..., and their improvements to it.
#opensource FTW!
#BaselSpatialOmicsSymposium

Curdin Franziscus from @spanglab.bsky.social @biozentrum.unibas.ch
Presents the SPEx method allowing to do proteomics at the subcellular scale, used to measure proteome of Golgi, nucleus and nucleoli organelles.
Paper available here: elifesciences.org/reviewed-pre...

#BaselSpatialOmicsSymposium

Kristy Ou from @biomedizin.unibas.ch: Follicular lymphoma originate in the lymph nodes and can transform into an aggressive lymphoma.
Generated a dataset including many spatial omics modalities on a cohort of 6 patients to characterize this process.
#BaselSpatialOmicsSymposium

Benedek Pesti from Roche on a mouse model of Alzheimer disease, to see the spatial effects of treatment targeting amyloid plaques
#BaselSpatialOmicsSymposium

Also some recent work on inferring copy number variation from imaging-based spatial transcriptomics data: www.biorxiv.org/content/10.1...
@nilssonlab.org
#BaselSpatialOmicsSymposium

He presents the COSTE method (cell-GPS package) to reveal the spatial organization of tissues: www.biorxiv.org/content/10.6...
@nilssonlab.org
#BaselSpatialOmicsSymposium

Keynote Mats Nillson presents a historical perspective on the development of padlock probes behind the Xenium technology #BaselSpatialOmicsSymposium

Very good start of the #BaselSpatialOmicsSymposium today, with full auditorium and interesting talks!
www.linkedin.com/posts/micros...

Heading to Basel for the Basel Spatial Omics Symposium? We can’t wait to see you there! 🇨🇭 Don’t miss our flash talk to learn how AVITI24™ is measuring biology at full resolution.

View details: https://bit.ly/4A30L0n.

#BaselSpatialOmicsSymposium #AVITI24 #Multiomics