INTACT-olotl: A simplified system for rapid cell type-specific profiling during axolotl limb regeneration #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752769v1

A tumor-cell MHC-II program is associated with checkpoint-blockade outcomes across stages of bladder cancer #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.21.753036v1

A fibroblast-rich transcriptomic axis reflects stromal remodeling within the CMS4 phenotype in colorectal cancer #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752659v1

Biosensor-enabled single-molecule enzyme activity profiling for function-based molecular counting #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752564v1

Spatially-resolved multimodal profiling identifies functionally-heterogeneous cancer-associated fibroblasts associated with poor radiotherapy outcomes in muscle-invasive bladder cancer. #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752662v1

Multiomics Characterization Identifies S1P-secreting USSHigh Skeletal Muscle Stem Cells as Essential Drivers of Niche Remodeling and Muscle Regeneration #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752516v1

DeepSCENIC: transfer learning from sequence-to-function models enables causal gene regulatory network inference #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752607v1

Variation in enhancer activity across brain regions defines neurological disease risk and shapes cellular pathology #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752151v1

TFE3 fusions drive expression of CD44 and SPP1 in Translocation Renal Cell Carcinoma #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752493v1

Inherited flagellar structures coordinate the onset of swimming among related E. coli cells #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.21.753120v1

Time-resolved single-cell state tracing exposes bidirectional state dynamics during differentiation #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752672v1

PIAS1 loss and INHBA gain define a TGFβ-driven EMT state in OSCC progression #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752768v1

Temozolomide-associated inflammatory-repair remodeling in recurrent glioblastoma exposes a ROCK-linked therapeutic vulnerability #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.20.752931v1

SPECTRA: predicting cellular perturbation responses with Graph Learning over Gene Regulatory Networks #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.21.752624v1

Glutamine—fructose-6-phosphate transaminase 2: A Key Biomarker and Regulator of Chemotherapy Response in Colorectal Cancer #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10851594/latest

Microglial HIF‑1α‑Driven Lactate Reprogramming Disrupts Cancer Metabolism and Redox Homeostasis in Glioma via TTF #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10927434/latest

Beyond Accuracy: Benchmarking the Reproducibilityand Robustness of Single-Cell Embeddings #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-11109782/latest

Single-cell multi-ancestry regulatory map of systemic lupus erythematosus #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752560v1

Single-cell multiomic QTL mapping reveals state-dependent genetic regulation and associated gene during cellular senescence #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.17.752532v1

Finite Topological Space Filtrations: A Topological Framework for Data Analysis #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2512.23348