Finsler Flow Matching: Dynamics-Aware Geodesic Interpolation for Single-Snapshot Trajectory Inference #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2610.11318

Predictive Multiplicity in Cell-Fate Assignment: Label-Free Rashomon Sets and the Limits of Per-Cell Certification #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2610.11185

1/5: New in GPB!

How does bone metastasis reshape hematopoiesis and immunity?

A cross-cancer single-cell atlas of 126,986 cells reveals profound remodeling of the metastatic bone marrow ecosystem.

Read the study: doi.org/10.1093/gpbj...

#BoneMetastasis #SingleCell

Subpopulations of Pseudomonas aeruginosa inflict distinct tissue damage during infection #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.06.757000v1

VINTER: a generative vision-language model for annotating and interrogating spatial tissues #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.01.752251v1

FlyAnatoView: Visualization of Drosophila Single-cell RNA-seq Datasets on Anatomographs #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.28.755010v1

Connectomics by Sequencing Reveals Self-Organizing Principles of Neuronal Networks in Cerebral Organoids #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.01.755792v1

Flexible 3D multimodal organoid interface reveals functional subnetworks and coordinated circuit activity in cortical organoids #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.02.756317v1

Non-invasive detection of mutagenic exposure to aristolochic acid using ultra-deep sequencing of blood and urine samples #SingleCell 🧪🧬🖥️
https://www.medrxiv.org/content/10.64898/2026.10.02.26363145v1

Inhibitory Nectin-2/TIGIT interactions between CD163+ macrophages and CD8+ T cells in spatially defined immune niches associate with poor outcomes in neuroblastoma #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.07.756693v1

HyperCom: a hypergraph-based method to infer cell-resolved cell-cell communication #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.30.755742v1

scStable: assessing scRNA-seq analysis stability under bulk-derived between-sample variation #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.01.755876v1

Trypanosoma congolense Variant Surface Glycoprotein gene expression occurs in the absence of monoallelic transcription control #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10600453/latest

Linking live-cell imaging to single-cell sequencing using genetic barcoding #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.07.757257v1

Identification of Autophagy-Related Biomarkers for Subtyping and Immune Microenvironment Remodeling in Ulcerative Colitis #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-11135302/latest

Transcript Isoform Remodeling in Human Skin Wound Healing #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-11209387/latest

Embryonic EMT programs establish proteoglycan expression patterns that persist in adult human tissues #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-11070727/latest

Stochasticity and Environmental Switching Shape Quorum Sensing Evolution in Bacterial Populations #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2610.10492

Truecell reproduces R Seurat's single-cell analysis outputs natively in the Python ecosystem #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2610.10482