Cell-Lens: Advancing LLM Reasoning at Single-Cell Resolution #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.19.752842v1

CMAC: A deep learning framework for absolute cardiomyocyte transcriptional age estimation #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.19.752897v1

On Growth and Form, and Function: Reusable Regulatory Handles Control Phenotypic Variation #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.29755

Phylodynamic inference with the bounded coalescent: a point process perspective #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.29035

Ultra-fast and scalable high-resolution full-length single-cell RNA sequencing using CHART-seq #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752546v1

PeakATail: precision-first poly(A)-site calling and calibrated alternative polyadenylation analysis in single-cell RNA-seq #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752791v1

ISP Platform powered by Geneformer: Framework for Cross-Species, Sequential, and Multi-Gene In Silico Perturbation Screens with Application to iPS Cell State Transitions #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.17.752497v1

NLRP3 inflammasome signaling orchestrates hepatic granuloma organization and protective immunity #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752760v1

TREM2 Orchestrates Myeloid Cell Programming and Immune Dysregulation in Pulmonary Hypertension #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752808v1

CytosMPS: an automated multimodal pooled screening platform for protein, morphology and transcriptomics #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.20.752925v1

Lossless compression of protein databases for efficient and accurate metagenomic sequence classification with Centrifuger #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.17.752512v1

Multi-Omic Profiling Defines the Renal Mechanisms of Cardiovascular-Kidney-Metabolic Syndrome in Pulmonary Arterial Hypertension #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.23.753744v1

Single-Cell and Spatial Analysis Reveals Retention of FCRL4⁺ Memory B Cells in Pediatric Tonsillar Hypertrophy #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.751603v1

Adaptive-like features of the γδ TCR couple chronic BTNL recognition to NK-like tissue immunity #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.17.751481v1

MoTRUST: adaptive semantic protection for mosaic single-cell integration and molecular recovery #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752592v1

Division of labor during bacterial warfare #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.21.753294v1

NicheScribe: consistent and generalizable annotation of stromal cells in the murine bone marrow niche #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.23.753907v1

Decoding subtype development and function in human pluripotent stem cell-derived midbrain dopaminergic neurons #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.23.753784v1

Extracting interpretable single-cell metabolic states with graph-guided representation learning #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.17.751504v1

Multimodal single cell analysis reveals a link between flowering and leaf initiation #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.23.753879v1