A Metacell Model of Single Cell RNA-seq Counts Yields a Gaussian Mixture Model in PCA Space #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.21.753263v1

Systems-level multi-omics integration identifies a survival-linked myeloid program in pancreatic ductal adenocarcinoma #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-11039446/latest

Stressed alga-free coral cells can initiate coral bleaching #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.30.755578v1

Early dynamics of a neutrophil interferon program drive immunotherapy resistance and limit durable anti-tumor immunity #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.30.755684v1

Multi-Model Machine Learning Consensus Identifies a Dual-Interferon Gene Signature in Ischemic Stroke: An Integrative Single-Cell Transcriptomic Analysis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.754010v1

Single-cell proteomics resolves major cell populations and protein-defined chondrocyte states in the adult human osteoarthritic joint #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.754302v1

Pervasive Somatic Mutations in NF1 Drive Cell Type and Spatially Specific Clonal Selection in Neurofibromatosis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.29.755447v1

CHACAM: a cell-cell interaction-guided hierarchical attention model for high-precision cell identity annotation of scRNA-seq data in early C. elegans embryogenesis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.24.754260v1

CycloCross: Adversarial single-cell RNA-seq data translation across species #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.24.754263v1

Stochastic Flow Map for Count Data #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.23290

Prototype Guided Post-pretraining for Single-Cell Representation Learning #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2605.07938

scTrilemma: Balancing Identity, Invariance, and Fidelity in Single-Cell Representation Learning #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.38840

Moment-based approximation of cell and face integrals in THINC/QQ reconstruction on unstructured grids #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.38215

CellMSA: Context Modeling for Single-Cell Representation Learning #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.38908

Single-cell transcriptomics reveals life cycle and cell cycle gene expression dynamics during in vitro growth of two Leishmania species #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.29.755301v1

Weakly-Supervised Gated Attention Multiple Instance Learning for Multi-Center Cervical Cytology Slide Triage #SingleCell 🧪🧬🖥️
https://www.medrxiv.org/content/10.64898/2026.09.29.26364279v1

Protocol for Single-Cell Patch-Proteomics: identify specific proteins associated with electrophysiological properties from individual neurons #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.24.750455v1

Spinal microglia are dispensable for the development of opioid-induced hyperalgesia #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.24.753592v1

ProxiNet transfers spatially learned cellular proximity to dissociated single-cell transcriptomes #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.754372v1