SCITRAM: a Single-cell Integrated transcription regulation modeler for predicting master transcription factors #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.30.755779v1

RecBCD Prevents Bacterial Autoimmunity by Clearing Self-DNA Ends Produced During Replication Termination #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.30.755081v1

scTrilemma: Balancing Identity, Invariance, and Fidelity in Single-Cell Representation Learning #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.38840

When Do Biological Reasoning Models Use Their Biological Inputs? #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2610.00898

A Shared Taste for Model-Written Text: The Generator-by-Selector Matrices of "AI-AI Bias" Show No Detectable Own-Model Premium #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2610.00369

Exponential quantum advantage in processing massive classical data #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2604.07639

Pheno-GS: Phenoscape-scale Geodesic Sinkhorn #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.27633

Diagnostic and Prognostic Gene Signatures Linking Endoplasmic Reticulum Stress and Metabolic Reprogramming in Colon Cancer #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10841128/latest

Computational aberration-corrected volumetric imaging of single retinal cell dynamics in the living eye #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10478534/latest

Astrocytic coactivation of Wnt beta catenin and pyroptosis pathways in neuropathic pain with human genetic evidence and drug prioritization #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10882221/latest

A transcriptomic readout of chromosomal instability reveals genome-stress states beyond proliferation in colorectal cancer #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-11096418/latest

Exploration of N7-methylguanosine and immune-related biomarkers in Acute Aortic Dissection by combining bulk RNA-seq sequencing data and single-cell RNA sequencing #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10908505/latest

Rank-Preserving Alignment Enables Cross-platform Learning and Phenotyping for Single-Cell and Spatial Proteomics #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.754510v1

Genetic risk and inflammatory signaling converge on cell type-specific regulatory programs in type 1 diabetes #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.753922v1

Diabetes related antibody signature highlights ZnT8 as a novel antigenic target in rheumatoid arthritis #SingleCell 🧪🧬🖥️
https://www.medrxiv.org/content/10.64898/2026.09.25.26364002v1

Nuclear acetyl-CoA accumulation drives reversible RBP hyperacetylation and transcriptome-wide splicing shifts in age-equivalent Alzheimer's disease neurons #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.26.754222v1

Limitations of differential expression for cell-type marker discovery in single-cell RNA sequencing atlases #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.754486v1

Cerebral organoids recapitulate interneuron chain migration in the human cortex #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.30.729488v1

Our expansion of single-cell epigenetics assays continues!

The Epigenome Technologies scCUT&Tag assay is now compatible with the BD Rhapsody platform

#Epigenetics #BDrhapsody #CUTandTag #Chromatin #Multiomics #Singlecell #CUTandRUN #ChIPseq #ATACseq

Learn more here: u.epigenome.us/NYjSGQao

TET loss of function selects for aneuploidies that confer a proliferative advantage #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.27.754858v1