scTrilemma: Balancing Identity, Invariance, and Fidelity in Single-Cell Representation Learning #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.38840

Moment-based approximation of cell and face integrals in THINC/QQ reconstruction on unstructured grids #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.38215

CellMSA: Context Modeling for Single-Cell Representation Learning #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.38908

Single-cell transcriptomics reveals life cycle and cell cycle gene expression dynamics during in vitro growth of two Leishmania species #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.29.755301v1

Weakly-Supervised Gated Attention Multiple Instance Learning for Multi-Center Cervical Cytology Slide Triage #SingleCell 🧪🧬🖥️
https://www.medrxiv.org/content/10.64898/2026.09.29.26364279v1

Protocol for Single-Cell Patch-Proteomics: identify specific proteins associated with electrophysiological properties from individual neurons #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.24.750455v1

Spinal microglia are dispensable for the development of opioid-induced hyperalgesia #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.24.753592v1

ProxiNet transfers spatially learned cellular proximity to dissociated single-cell transcriptomes #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.754372v1

We have recently expanded our single-cell epigenetics assays!

Our Emulsion scCUT&Tag assay is now compatible with the Illumina PIP-seq platform

#SingleCell #EpigenomeTech #PairedTag #Multiomics #Epigenetics #scCUTandTag #PIPseq

Learn more here: u.epigenome.us/NYjSGQao

THE MICROANATOMY OF INTRACRANIAL HUMAN THROMBI BY SINGLE NUCLEI TRANSCRIPTOMICS #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.29.755188v1

Age-Dependent Effects of Macrophage Derived Cathelicidin Antimicrobial Peptide on Bone Fracture Repair #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.29.755446v1

Desmoglein-1 coordinates cell proliferation and actin dynamics to promote epidermal morphogenesis. #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.29.755418v1

Cell-of-origin shapes tumor subtype in BRCA1-associated triple-negative breast cancer #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.29.755499v1

Single-Cell Omics to Uncover Cell-Type-Specific Gene Regulatory Networks Driving Mucilage Production in Specialized Roots #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.29.755433v1

The Metabolic Organ Clock: A Computable Framework Linking Cell-Lineage Architecture to Emergent Organ Bioenergetics #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.29.755490v1

Chikungunya Virus Infection of Monocytes Generates a Persistent Macrophage Reservoir That Promotes IFN-π/IL-27-STAT1- and NF-κB-Driven Chronic Arthritis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.24.754283v1

Epigenetics Update - Photolabile oligonucleotides with topological light gradients enable spatially resolved single-cell transcriptomics and epigenomics www.nature.com/articles/s41...

Maxwell Z. Wilson & Siddharth S. Dey in Nat Biotech

#Epigenetics #SingleCell #Multiomics
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epigenometech.com

Integration of Multidimensional Genetic and Single- Cell Analyses to Identify Potential Drug Targets and a Clinical Risk Prediction Model for Cervical Cancer #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10712879/latest

PDCD10 loss is associated with inflammatory and barrier-related endothelial remodeling in cerebral cavernous malformation #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-10922122/latest

Single-cell mapping of the endocannabinoid system in breast cancer reveals distributed expression and ECS-NK correlations that track immune composition #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-11055203/latest