Rank-Preserving Alignment Enables Cross-platform Learning and Phenotyping for Single-Cell and Spatial Proteomics #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.754510v1

Genetic risk and inflammatory signaling converge on cell type-specific regulatory programs in type 1 diabetes #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.753922v1

Diabetes related antibody signature highlights ZnT8 as a novel antigenic target in rheumatoid arthritis #SingleCell 🧪🧬🖥️
https://www.medrxiv.org/content/10.64898/2026.09.25.26364002v1

Nuclear acetyl-CoA accumulation drives reversible RBP hyperacetylation and transcriptome-wide splicing shifts in age-equivalent Alzheimer's disease neurons #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.26.754222v1

Limitations of differential expression for cell-type marker discovery in single-cell RNA sequencing atlases #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.754486v1

Cerebral organoids recapitulate interneuron chain migration in the human cortex #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.30.729488v1

Our expansion of single-cell epigenetics assays continues!

The Epigenome Technologies scCUT&Tag assay is now compatible with the BD Rhapsody platform

#Epigenetics #BDrhapsody #CUTandTag #Chromatin #Multiomics #Singlecell #CUTandRUN #ChIPseq #ATACseq

Learn more here: u.epigenome.us/NYjSGQao

TET loss of function selects for aneuploidies that confer a proliferative advantage #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.27.754858v1

A Metacell Model of Single Cell RNA-seq Counts Yields a Gaussian Mixture Model in PCA Space #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.21.753263v1

Systems-level multi-omics integration identifies a survival-linked myeloid program in pancreatic ductal adenocarcinoma #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-11039446/latest

Stressed alga-free coral cells can initiate coral bleaching #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.30.755578v1

Early dynamics of a neutrophil interferon program drive immunotherapy resistance and limit durable anti-tumor immunity #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.30.755684v1

Multi-Model Machine Learning Consensus Identifies a Dual-Interferon Gene Signature in Ischemic Stroke: An Integrative Single-Cell Transcriptomic Analysis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.754010v1

Single-cell proteomics resolves major cell populations and protein-defined chondrocyte states in the adult human osteoarthritic joint #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.25.754302v1

Pervasive Somatic Mutations in NF1 Drive Cell Type and Spatially Specific Clonal Selection in Neurofibromatosis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.29.755447v1

CHACAM: a cell-cell interaction-guided hierarchical attention model for high-precision cell identity annotation of scRNA-seq data in early C. elegans embryogenesis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.24.754260v1

CycloCross: Adversarial single-cell RNA-seq data translation across species #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.24.754263v1

Stochastic Flow Map for Count Data #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.23290

Prototype Guided Post-pretraining for Single-Cell Representation Learning #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2605.07938