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Robert Haase

@haesleinhuepf.bsky.social

1.1k Following4.2k Followers

Biomedical Computer Vision & Language Models, scads.ai / Leipzig University, also NFDI4BIOIMAGE, NEUBIAS/GloBIAS, GPUs, AI, ML πŸ”¬πŸ–₯οΈπŸš€ views:mine

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@haesleinhuepf.bsky.socialOct 12, 2026, 10:35 AM

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@henriqueslab.bsky.socialOct 12, 2026, 9:34 AMReposted by @haesleinhuepf.bsky.social

πŸš€ Rxiv-Maker is now peer-reviewed and open access! Write your manuscript in Markdown and get a typeset PDF or an editable Word file, with figures, citations and cross-references numbered for you. Led by Bruno Saraiva, with @guijacquemet.bsky.social's lab πŸ”¬

doi.org/10.1242/jcs.265183

Top of the first page of the published article 'Rxiv-Maker – an automated template engine for streamlined scientific publications' by Bruno M. Saraiva, Rita Carlota, AntΓ³nio D. Brito, IvΓ‘n Hidalgo-Cenalmor, Guillaume Jacquemet and Ricardo Henriques, showing the title, authors and abstract.
@haesleinhuepf.bsky.socialSep 29, 2026, 7:35 AM

The hands-on exercises are #openaccess as well scads.github.io/llm-data-ana...

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@haesleinhuepf.bsky.socialSep 28, 2026, 7:30 PM

Merci beaucoup again @rdplab.bsky.social and @ckirchhelle.bsky.social for having me! It was a day full of exciting discussions, exchange and I'm looking forward to our future collaborations! πŸ™Œ

@henriqueslab.bsky.socialSep 15, 2026, 9:18 AMReposted by @haesleinhuepf.bsky.social

πŸ”¬πŸš€ Out now in Communications AI & Computing: mAIcrobe, our open-source napari plugin for high-throughput bacterial image analysis. Segmentation, morphological profiling and cell cycle classification, all in one place πŸ‘‡

doi.org/10.1038/s44488-026-00022-y

Screenshot of the published article page. Software, Open access, published 15 September 2026. Title: mAIcrobe, an open-source framework for high-throughput bacterial image analysis. Authors: AntΓ³nio D. Brito, Dominik Alwardt, Beatriz de P. Mariz, SΓ©rgio R. Filipe, Mariana G. Pinho, Bruno M. Saraiva and Ricardo Henriques. Communications AI & Computing 1, article number 16 (2026), followed by the abstract.Diagram of the mAIcrobe workflow. Acquisition feeds into segmentation with StarDist, Cellpose and community models, then into morphological profiling and a three-class cell cycle classifier, ending in a feature-space scatter plot with three separated clusters.
@haesleinhuepf.bsky.socialSep 23, 2026, 10:26 AM

I just published a critical bugfix to bia-bob, the AI coding assistant within Jupyter. Updating code within cells should work again! Try it out: pip install bia-bob==0.36.2

github.com/haesleinhuep...

@helmholtzimaging.bsky.socialSep 17, 2026, 6:27 AMReposted by @haesleinhuepf.bsky.social

Helmholtz Imaging Conference 2026: abstract submissions deadline extended!

Submit your contribution by 30/9 πŸ‘‰ events.hifis.net/event/3981/p...

Inspiring keynotes, new formats, workshops, community spirit & Kunstkraftwerk Leipzig await!

See you there! πŸ‘‹

@helmholtz.de @helmholtzai.bsky.social

@drlachie.bsky.socialSep 10, 2026, 12:09 AMReposted by @haesleinhuepf.bsky.social

Proud to present the publication of napari-lattice – our solution to the immense computational requirements of Lattice Light Sheet and Oblique Plane Microscopy.
onlinelibrary.wiley.com/doi/10.1111/...
Before I get into the thread, the important part is on github:
github.com/BioimageAnal...
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