It's a single Python script, easy for biologists (and AI) to adapt to your own pipeline.
Built in the Mattei group (@simonemattei.bsky.social ) at @embl.org Heidelberg with help from @nastiaincryo.bsky.social, Euan Pyle and @hvdrosa.bsky.social.
Feedback and issues are very welcome!

What it does:
• XY/XZ/YZ viewer with synced zoom and pan
• Flags that can double as counters
• Ruler for quick size checks
• Autosaves, so you can stop and resume anytime
• A link command to collect e.g. all good tomograms with mitochondria for processing
doi.org/10.5281/zeno...

Releasing TOMATO, the TOMogram Annotation TOol!
A lightweight Python GUI for going through hundreds of cryo-ET tomograms. Flag what's in each one, grade its quality, and end up with a table you can filter and act on.
github.com/alkemasimon/...