@rupdecat.fediscience.org.ap.brid.gy
PhD in Biophysics, Postdoc in Genetic Epidemiology, Detour in Industry, Currently: Computational Scientist (Life Science Support) HPC (NHR, University of Mainz (on […]
🌉 bridged from ⁂ https://fediscience.org/@rupdecat, follow @ap.brid.gy to interact
@rupdecat.fediscience.org.ap.brid.gyThis means, I created https://w3id.org/np/RAWWNwR6ccsRtztmFghqaYzX4KgRH3q8eHGMeaF2zySV0 this year and not "my" CiTO nanopub for the example DOI. 😱
I know what I have to do then: Publish another CiTO nanopub minimum, this year‼️
@felienne.mastodon.social.ap.brid.gyReposted by @rupdecat.fediscience.org.ap.brid.gyIf we want to regulate AI, why not start with a simple ban on LLMs using "I"?
Easy to build, easy to verify and deflates a hype while still allowing people to use chatbots (so no one can claim we are limiting anything)
My latest for @volkskrant in English! […]
@rupdecat.fediscience.org.ap.brid.gy@egonw then yes. I think, I will change the approach, though. In my Snakemake plugin it submits to the test server per default. You need to say I-really-want-to-create-a-nanopub on the command line to publish [edit:] "for real". I envision a similar approach for the GUI, e.g. by dialogue.[/edit] […]
@rupdecat.fediscience.org.ap.brid.gy@egonw What do you mean by "the new nanopub"?
Need to work on a few things. AFAIK, signing and licensing are still on the to-do list for the Python-API.
Regarding scalability: IMO, manual labour is always required. But the graphical support and indicating title, DOI and options to choose from […]
@rupdecat.fediscience.org.ap.brid.gy@egonw Thanks! (Did bookmark this - need to work on it at a later time. Today is some work to do, but Sunday after all.)
@rupdecat.fediscience.org.ap.brid.gy@egonw would you know how to search for your own cito nanopubs? I desperately want to avoid duplicates ... 🙄
@rupdecat.fediscience.org.ap.brid.gy@egonw personally, I very much like the idea of searching for cited DOIs using crossref very much. E.g. with this software of mine from https://github.com/cmeesters/nanopub-cito-creator. I have to admit, development ceased due to all my troubles last year. It […]
@biohackrxiv.fediscience.org.ap.brid.gyReposted by @rupdecat.fediscience.org.ap.brid.gy"DBCLS BioHackathon 2026 report: An interactive, harmonised BioSample metadata resource for biological sample discovery" https://doi.org/10.37044/osf.io/hm9fn_v1
#biohackathon #BH26JP #BioSamples #bioinformatics
"The BioSample database contains tens of […]
@mdziemann.genomic.social.ap.brid.gyReposted by @rupdecat.fediscience.org.ap.brid.gyExciting news -- The 1st RN4CB Seminar is locked in for the 29th Oct!
Dr Daniel Mietchen (FIZ Karlsruhe — Leibniz Institute for Information, Germany) will present his work on "Observing computational reproducibility in the wild".
Register here […]
@steve.mastodon.cooleysekula.net.ap.brid.gyReposted by @rupdecat.fediscience.org.ap.brid.gySome reflections from a physicist on the 2026 #NobelPrize in Physiology or Medicine.
"This prize is essentially awarded for the discovery of a specific protein sensitive to light, and the subsequent deployment of the protein (via genetic expression in specific cells, cell groups, or cell types) […]
@donelias.mastodon.cr.ap.brid.gyReposted by @rupdecat.fediscience.org.ap.brid.gyEvery damn time
@rupdecat.fediscience.org.ap.brid.gy@egonw I don't get it to work 🤷♂️ . But it is not super important, anyway. Need to pack for a short holiday now.
@rupdecat.fediscience.org.ap.brid.gy@egonw ah, this query requires a personal wiki data item! Overlooked this completely. Well, then ... 🤷♂️
@rupdecat.fediscience.org.ap.brid.gy@lavaeolus Toi, toi, toi!
@egonw.mastodon.social.ap.brid.gyReposted by @rupdecat.fediscience.org.ap.brid.gyapparently, 70 of my co-authors are on Mastodon (https://qlever.dev/wikidata/7dwB9n), out of 749 co-authors with items in Wikidata (https://qlever.dev/wikidata/PQ58OM)
I wonder if I am following all of them
@rupdecat.fediscience.org.ap.brid.gy@egonw wow! Perhaps your collaborators are more likely to be found on Mastodon?
Unfortunately, the same query replaced with my ORCID gives zero output. Although I do not know how high the number should be, it should definitively be > 0.
@anwagnerdreas.hcommons.social.ap.brid.gyReposted by @rupdecat.fediscience.org.ap.brid.gyDas @bistummainz sucht übrigens eine Person (m/w/d, Vollzeit, unbefristet, angelehnt an TVöD EG 12) als Klimaschutzmanager:in und Umweltbeauftragte:n. Bewerbungsschluss ist am 23.10.2026. Ziel ist es, den Beitrag des Bistums zur Bewahrung der Schöpfung konkret und messbar zu stärken […]
@egonw.social.edu.nl.ap.brid.gyReposted by @rupdecat.fediscience.org.ap.brid.gynew blog: "New paper: "ToxTempAssistant: using large language models to standardise cell-based toxicological test method descriptions"" […]
@rupdecat.fediscience.org.ap.brid.gyDie drei im RMU-Verband (Rhein-Main-Universitäten) zusammen bei der Exzellenzinitiative angetretenen Universitäten aus #Mainz, #Frankfurt und #Darmstadt erhalten den "Exzellenzstatus" zugewiesen […]
@rupdecat.fediscience.org.ap.brid.gyOh. By the way ... poster and talk were modestly successful, measured in feedback and new users.
