explore | Grilled Cheese

If you've moved a long-read pipeline from research into production, what broke first: compute, validation, or people? 4/4 #Nanopore #Bioinformatics #LongReads

Congratulations to my @i2sysbio.es colleague Ana Conesa @anaconesa.bsky.social and her team for the new paper on long-read RNA-seq published in Nature Communications!
#bioinformatics

The platform answers complex bioinformatics and GenePattern system questions. The initial architecture used LangChain, LangGraph and ChromaDB to query a decade of help forum answers, notebooks, platform docs and genomics tool specs. #Bioinformatics

🔬Vols investigar què s'amaga al "dark proteome"?
🌊L' @researchmar.bsky.social #HMRIB busca un/a PhD per al grup de @maralbalab.bsky.social dins de l' #ORFeusproject.
🧬Microproteïnes, bioinformàtica i genòmica evolutiva.
📅Fins 22/10
✍️Aplica ara: www.researchmar.net/media/upload...
#Bioinformatics

📢 Share your latest research in #bioinformatics. Submit to #GLBIO2027 Proceedings!

PLUS: Accepted papers will be published in a special issue of @bioinfoadv.bsky.social

🗓️ Deadline: January 7, 2027

🔗 Learn more: https://www.iscb.org/glbio2027/call-for-submissions/proceedings

Does your study require #spatialtranscriptomics?
We have a sample report available demonstrating how #bioinformatics can help!
Request the report today at:
https://www.fiosgenomics.com/spatial-transcriptomic-analysis-report

SoftGene uses a hierarchical protein language model encoder (ESM) to turn amino acid sequences into soft prompts for LLM-based gene set annotation, aiming to make functional genomics interpretation more…

#AIinGenomics #PromptEngineering #LLMs #Bioinformatics
https://arxiv.org/abs/2610.03029

AI can mask gaps in computational rigor or biological understanding.

Meanwhile, bioinformaticians trained in both struggle to find work.

How do we make that combined expertise visible—and valued?

#Bioinformatics #Biotech #AcademicSky

Is AI lightening the computational load in bioinformatics—and giving biological expertise more weight?

AI can help write code. Choosing meaningful questions and judging the answers still takes biological and statistical expertise.

Educators: what should change?

#Bioinformatics

Flow Tree: A model for navigator dynamics and environmental complexity doi.org/10.1098/rsif... | #JRSocInterface #Biogeography #Bioinformatics #ComputationalBiology

🔬 Computer Science | Lecturer, Comp Bio @barnard-college.bsky.social
How do we teach the next generation of researchers to bridge biology and computation?
https://barnard.wd1.myworkdayjobs.com/en-US/Faculty/jobs/details/Lecturer-of-Biological-Sciences_JR2026296
#Bioinformatics #BioinfJobs

🔬 Computational Biologics Design, Associate Principal Scientist @astra-zeneca.bsky.social
This looks like a good step for an experienced computational biologist, not an entry level role.
https://jobrxiv.org/job/computational-biologics-design-associate-principal-scientist/
#Bioinformatics #BioinfJobs

Writing a Bacillus population genetics paper without using the word "diversity" difficulty level: impossible. #PhD #Biology #Bioinformatics

Reliable #AlternativeSplicing detection is key for clinical biomarkers.
This review highlights #RNAsequencing benchmarking, standardization and analytical optimization for reproducible results. #Bioinformatics
#OpenAccess in #GenesAndDiseases: doi.org/10.1016/j.ge...

One week into my MSc thesis, I started a new Obsidian vault as a "second brain". Funnily enough, one node already acts as a hub, linked to most of its cluster.

What helps: a daily note template, and linking new ideas to something I already wrote.

How do you track your research?

#Bioinformatics