@abinstitute.bsky.socialHappening now in Cape Town: African researchers are working with their own agricultural and genomic datasets at the APBA/ABI Agri-informatics Hackathon, using bioinformatics to turn complex data into useful insights for crop research and breeding.
#Bioinformatics
@scivera.bsky.socialHi everyone! I'm new to #Bluesky. I'll be posting about #bioinformatics and #programming here (and over on X at @scivera). Hope to connect and build a great community with you all!
@scivera.bsky.social3/3 What I found interesting is that some of the same ideas show up in bioinformatics too: working with long sequences and looking for patterns in them.
I’ve uploaded the project to GitHub.
@fiosgenomics.bsky.social𝐀𝐫𝐞 𝐲𝐨𝐮 𝐰𝐨𝐫𝐤𝐢𝐧𝐠 𝐰𝐢𝐭𝐡 𝐇𝐢-𝐂 𝐝𝐚𝐭𝐚?
Discover how #bioinformatics helps turn Hi-C data into valuable insights on chromatin conformation and interactions between genomic regions.
Request our sample Hi-C report at:
https://www.fiosgenomics.com/hi-c-data-analysis-sample-report
@cybergenic.imThe code, every pair either method calls, and both DOIs, so anyone can rerun it:
cybergenic.im/blog/co-mutation-scan-vs-selectsim
Written by an AI from the published data. Corrections welcome. #bioinformatics #cancergenomics
@siliconsignalai.bsky.socialTurboPairFormer presents a triangular attention kernel for NVIDIA Hopper GPUs that stabilizes AlphaFold3-style training with a key-tile-parallel backward pass and ordered partial reductions, avoiding floating-point…
#AI #GPUs #Bioinformatics #AIInfrastructure
https://arxiv.org/abs/2610.05854
@joaomoutinho.bsky.socialAs a bioinformatician, two zsh plugins became non-negotiable for me: zsh-autosuggestions (autocomplete from my command history) and zsh-syntax-highlighting (green = valid command, red = typo). Lifesavers for shell scripting!
What else in your terminal setup?
@jmirlatestresearch.bsky.socialEnriching Public Pathogen Genomic Records With Patient Metadata: Quantitative Study and Exploratory Case Analysis #Genomics #Bioinformatics #PublicHealth #COVID19 #SARSCoV2
@fiosgenomics.bsky.social🚨 Batch effects can distort your -omics data! 🚨
Technical variations can:
⚠️Obscure true biological variation
⚠️Inflate false discovery rates
⚠️Compromise statistical power
Find out more about it in our blog! https://www.fiosgenomics.com/how-to-identify-and-correct-batch-effects
#Bioinformatics
@physaliacourses.bsky.socialRegistrations are now open for the 10th edition of the Winter School in #Bioinformatics with Christoph Hahn and @passdan.bsky.social
Join us and learn about #Linux #RNAseq #GenomeAssembly #Phylogenomics and much more!
@pha4ge.bsky.social🧬 What happens after genomic data is generated?
Bioinformatics uses computational methods to process, analyse and interpret that data — helping turn sequencing data into useful information for public health.
@embo.orgRead more (in Spanish) here:
www.sebibc.es/alfonso-vale...
#bioinformatics #ComputationalBiology #LifeSciences #research
@ibgunduz.bsky.socialOur preprint is out! 🎉 methylTFR quantifies transcription factor activity from DNA methylation, for each sample or cell, with GC bias correction.
📄 www.biorxiv.org/content/10.6...
#SingleCell #DNAmethylation #Bioconductor #Epigenomics #Bioinformatics
🧵👇
@gethemudo.ecoevo.social.ap.brid.gyEnsembl changed its website, and now the BiomaRt package is giving errors. I changed the initial call to use one of the archived databases (jun2026.archive.ensembl.org) and it seemed to work.
useEnsembl(biomart = "genes", host="jun2026.archive.ensembl.org")
@oskolkov.bsky.socialOnly 2 days left! I'm hiring a computational postdoc to join my group — exciting science, great team, don't wait! Apply now 👇 euraxess.ec.europa.eu/jobs/464445 #PostdocPosition #Bioinformatics #AcademicJobs
@fiosgenomics.bsky.socialAre you working with ATAC-seq data?
Discover how #bioinformatics helps turn ATAC-seq data into valuable insights!
Request our sample ATAC-seq #dataanalysis report today at:
https://www.fiosgenomics.com/sample-atac-seq-data-analysis-report
@suitch-co.bsky.socialA bioinformatics role focused on workflow design and usability, open to those in the London-Detroit corridor.
@antifreezeprot.bsky.socialI know programming!!! 🖥️💾💽 I don’t do experiments!!! #bioinformatics #mathematics #programming #medicine #andrea #misskomljenovic #vienna #austria🇦🇹 all the time I have GitHub!!! #github
@cybergenic.imLung cancer driver mutations that avoid each other, or travel together, in 6,575 MSK-IMPACT patients. EGFR and KRAS share 11 tumours where chance predicts 305; KEAP1 and STK11 share 130 where it predicts 42. Known biology, recovered under a burden-aware null.
@yeastgenome.bsky.socialThe first integrated #eukaryotic #genome #database has now been running for 30+ years. 🧬 A new history of #SGD traces how a #Stanford #yeast database became a global hub for #genetics, functional #genomics & #humanDisease research. 📄 bit.ly/SGD30FEMSYeast #bioinformatics
