💡New paper! Predicted off-targets for Seladelpar and Zanamivir with AlphaFold3 + MD, then tested the top 3. All inactive. For PPARγ, 4 of 5 AF3 models put the drug ~8 Å off - the only correct pose scored lowest confidence. Stability ≠ function.
link.springer.com/article/10.1...
#alphafold #boltz2

Same predicted complex, different confidence scores:

ipTM: 0.38
ipSAE: 0.75

Why can these metrics differ? Full breakdown 👇

youtu.be/k4yBqddtPyQ

#AlphaFold #AFDB

AlphaFold can now predict protein complexes at unprecedented scale. But once we have a predicted complex, the core question of how much we should trust the interface remains. Existing confidence scores are useful, but their meaning is not always obvious.
#alphafold

DeepMind AI Projects: From AlphaGo to AlphaGenome

Explore AlphaGo, AlphaFold, AlphaGenome, AlphaEvolve, Gemini, Co-Scientist, GraphCast, and more in this updated project guide.
www.theofficialalphabet.com/deepmind/dee...

#DeepMind #AIResearch #MachineLearning #AlphaFold #Gemini #theofficialaphabet

Want to run tools like #AlphaFold faster? 💻 🧬

On Tue 22 September, discover how to access Australia's largest #GPU cluster on #Setonix @pawseycentre.bsky.social and troubleshoot common GPU pipeline issues 🔗

#alphafold

An adapted AlphaFold2-Multimer workflow predicts both pre- and postfusion conformations of class I virus fusion proteins, supporting structure-based epitope mapping and vaccine design 🧬🤖 #AlphaFold #VaccineDesign
📄 https://doi.org/10.1371/journal.pone.0351662
👤 EVBC: Clara Schoeder, Jens Meiler

New video 🎥

The AlphaFold-Multimer prediction for your protein looks great. But how confident should you actually be in it?

Razan Abbara breaks down the 5 confidence metrics behind every AFDB multimer entry:
pLDDT · ipTM · ipSAE · pDockQ2 · LIS 👇

youtu.be/k4yBqddtPyQ
#AlphaFold #AFDB

30 nov. 2020. Score: 92,4.
Vijftig jaar wetenschappelijke strijd. Voorbij.
In één kwartier leerde een AI denken als de natuur.
Nieuwe aflevering 🎧
#HetBeslissendeKwartier #AlphaFold #DeepMind

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